Interface of UPS
Starting from an intuitive web interface, users can submit single or multiple sequences in fasta format.
Four options can be conducted for probe design in UPS.
Option Unique Probe within group is
used to select the best, most unique probe
for each sequence to match its target but will not hybridize to
all the other submitted sequences.
Probe in the specific organism is to
devise probes for each submitted sequence
to identify its target among the selected genetic background
based on Unigene.
Probe based on pangenomic level is to customize the probe design among environmental and non-redundant nucleotide sequences on the level of pangenomics.
Probe based on user's defined organism is to allow users to upload a set of sequences or genomes in fasta format as the reference genetic background for probe design.